Compilation and analysis of 54-dependent promoter sequences
نویسندگان
چکیده
منابع مشابه
Compilation and analysis of eukaryotic POL II promoter sequences.
A representative set of 168 eukaryotic POL II promoters has been compiled from the EMBL library and subjected to computer signal search analysis. Application of this technique to E. coli promoters as a control ensemble revealed the well known consensus sequences at -35 and -10 which indicates that the methods are adequate to approach problems of this kind. The results obtained from the eukaryot...
متن کاملCompilation and analysis of Escherichia coli promoter DNA sequences.
The DNA sequence of 168 promoter regions (-50 to +10) for Escherichia coli RNA polymerase were compiled. The complete listing was divided into two groups depending upon whether or not the promoter had been defined by genetic (promoter mutations) or biochemical (5' end determination) criteria. A consensus promoter sequence based on homologies among 112 well-defined promoters was determined that ...
متن کاملSURVEY AND SUMMARY Compilation and analysis of σ54-dependent promoter sequences
Promoters recognized by the RNA-polymerase with the alternative sigma factor σ54 (Eσ54) are unique in having conserved positions around –24 and –12 nucleotides upstream from the transcriptional start site, instead of the typical –35 and –10 boxes. Here we compile 186 –24/–12 promoter sequences reported in the literature and generate an updated and extended consensus sequence. The use of the ext...
متن کاملCompilation of E. coli mRNA promoter sequences.
An updated compilation of 300 E. coli mRNA promoter sequences is presented. For each sequence the most recent relevant paper was checked, to verify the location of the transcriptional start position as identified experimentally. We comment on the reliability of the sequence databanks and analyze the conservation of known promoter features in the current compilation. This database is available b...
متن کاملCompilation and analysis of intein sequences.
We have compiled a list of all the inteins (protein splicing elements) whose sequences have been published or were available from on-line sequence databases as of September 18, 1996. Analysis of the 36 available intein sequences refines the previously described intein motifs and reveals the presence of another intein motif, Block H. Furthermore, analysis of the new inteins reshapes our view of ...
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 1999
ISSN: 0305-1048,1362-4962
DOI: 10.1093/nar/27.22.4305